rs31664352 SNP Detail

Summary

• ID
  rs31664352
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119304146 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTATTTTAC CTTATCCCCA
  GAAACAGACC AAAGGGACAA GGCTGGGCTC AGCATGATCC CTGGACTCAG GTTGGAGAAC
  GGGGTTGATA AGCTAGGACT GACCAACCTT TGAACCTCCC AAACCAGAAA CCTACAGTTT
  TGACTCCGAT GGGCTAATCA GATCAGCTAG CCTGGAACCC TTCAGAAATG CTAAATCTCA
  R
  GTGCCGCACA GACAACAAAA TCCCAGGCAA TTTGGGGACA TATTCAAGAT TGAGAAGTAC
  AGGCCAGCAG ATTGAGCCAG GGCCTAACAG CTACCCAGAA AGCCATGCTG GTATAACTCT
  AGGTCAGGCA AGTGGGGACA GCATGGGCTG CATACAGTTA GCCTAGAGAA GCTGCGACAG
  GAAATGGCAG ATTTTAAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48075173	NES11874812	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31664352					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48075173	NES11874812	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119304146 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cacna2d4	calcium channel, voltage-dependent, alpha 2/delta subunit 4			Intron
				Noncoding-Transcript-Variant
Lrtm2	leucine-rich repeats and transmembrane domains 2			Intron
				Noncoding-Transcript-Variant
Rr637632	regulatory region 637632			1240 bp proximal