rs31664350 SNP Detail

Summary

• ID
  rs31664350
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119304091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACTCCCCA CCCCCACCCC
  ACCTTCATCT GCAGGACCTG CACCCAGAAC TAACCTGTAT TTTACCTTAT CCCCAGAAAC
  AGACCAAAGG GACAAGGCTG GGCTCAGCAT GATCCCTGGA CTCAGGTTGG AGAACGGGGT
  TGATAAGCTA GGACTGACCA ACCTTTGAAC CTCCCAAACC AGAAACCTAC AGTTTTGACT
  Y
  CGATGGGCTA ATCAGATCAG CTAGCCTGGA ACCCTTCAGA AATGCTAAAT CTCAAGTGCC
  GCACAGACAA CAAAATCCCA GGCAATTTGG GGACATATTC AAGATTGAGA AGTACAGGCC
  AGCAGATTGA GCCAGGGCCT AACAGCTACC CAGAAAGCCA TGCTGGTATA ACTCTAGGTC
  AGGCAAGTGG GGACAGCATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss48075171	NES11874811	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31664350					SNP	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48075171	NES11874811	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119304091 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cacna2d4	calcium channel, voltage-dependent, alpha 2/delta subunit 4			Intron
				Noncoding-Transcript-Variant
Lrtm2	leucine-rich repeats and transmembrane domains 2			Intron
				Noncoding-Transcript-Variant
Rr637632	regulatory region 637632			1295 bp proximal