rs31663515 SNP Detail

Summary

• ID
  rs31663515
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:80945033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGGGTCCTC CAGTCGTGGA GCTGATGGTC GGGTCTCTGG
  CGCTGCAGAT GGGAGTTTCC TGAGTCCGCG TGCACTTTCT GGGGTGGGGG CAGATTTCGG
  S
  AGTTTGCAAC TTCCGAAGCT CACTGAGTAG AGGGAGCGGG AAGTGCCCCG CAACCTCAGA
  GTGGAGAGGA CGCATGGGCT ATGGAAAGGA TTGGAAAAG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45557409	mCV24540410	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	C	G
ss135389034	ENSMUSSNP1121417	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		G
ss320813774	CHEV_3_80841648	CHEVERUD	SCREENING_POP	f	SNP						G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31663515					SNP	G	G	G	C	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:80945033 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13283	CpG island 13283	within coordinates
Gm16000	predicted gene 16000	within coordinates
Gm64611	predicted gene, 64611	within coordinates
Pdgfc	platelet-derived growth factor, C polypeptide	Intron
Rr578682	regulatory region 578682	1300 bp distal
Rr578683	regulatory region 578683	617 bp distal
Rr578684	regulatory region 578684	1266 bp distal
Rr578685	regulatory region 578685	1210 bp distal
Rr578686	regulatory region 578686	758 bp distal
Rr578687	regulatory region 578687	54 bp distal
Rr578688	regulatory region 578688	within coordinates
Rr578689	regulatory region 578689	1121 bp proximal
Rr578690	regulatory region 578690	1647 bp proximal
Rr578691	regulatory region 578691	1834 bp proximal
Tssr29617	transcription start site region 29617	1355 bp downstream
Tssr29618	transcription start site region 29618	988 bp downstream
Tssr29619	transcription start site region 29619	715 bp downstream
Tssr29620	transcription start site region 29620	650 bp downstream
Tssr29621	transcription start site region 29621	521 bp downstream
Tssr29622	transcription start site region 29622	501 bp downstream
Tssr29623	transcription start site region 29623	335 bp downstream