rs31663430 SNP Detail

Summary

• ID
  rs31663430
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119467555 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAATCATG CATGAAGATA
  GAGCTAAGCA TCCTGTTACT GTGAAAGAAA AATAGAAAAA GAGTTGGGAG TTTACATTTT
  TGTTCTAATT CACTTTAATT ATCAAAGGAA TGCAGTATAT TCACTGCCCA CATGAAGCCG
  TCTTTGTAGA ATCTAAAGGG GCCCGTGAAG CCAGACCCTG ATGGGTCTAA GAAGGATGTG
  M
  GGTTTCTTGC ACGGTGTAAA TGCAGAACGT AGACGAGAGA AAGGCAGCCG AAGACAAGCA
  TGCACTCAGA GCCGCGGGGC CACCCTGGCC AGATTCCACA TGCTGCAGTG AGGGGTGGGC
  TGAGGGCGTA GAGGATGGGC TCTTGTCCTC TTGACACTTA GAGTCTCTGA GGTCAGAGAA
  TCAGAGCGTG GGTCTGAGGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	PWD/PhJ
ss48076049	NES11870109	PERLEGEN	MM_PANEL2	f	SNP	C	A	A	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	PWD/PhJ
rs31663430					SNP	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48076049	NES11870109	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119467555 () rs orientation: forward

Symbol	Name	Function Class
Rr637698	regulatory region 637698	217 bp distal
Rr637699	regulatory region 637699	665 bp distal
Rr637700	regulatory region 637700	within coordinates
Rr637701	regulatory region 637701	348 bp proximal
Rr637702	regulatory region 637702	1210 bp proximal
Wnt5b	wingless-type MMTV integration site family, member 5B	Intron