rs31663428 SNP Detail

Summary

• ID
  rs31663428
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119455881 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGGCCGAG GAAAAAGACA
  AAACCTGGTG TAGGTTAGAG CGCAAGGCAG GGGCAGAAGC AGTGGGAAGT TTTGACACAA
  AGTTGAAAGG GAAAGGAACT CACATGGGTG TATGGAAACA ACAAGATTGT GGAAGGCAGG
  CACACTGGAC AACTTCCAGA AATTTCTAGA ACGAGAGCTG TCAAACTATG CTGACTAAAA
  S
  CCACTTTCTC CACCAAATTA AGACTCACTA CTAAAGAGAA AGGAATGGTG GGAAGGCCGC
  CCGACTGGGG CAGTGGGTGT GGTGAGATGG TTAAAGGCGC TCTGAGAAGT AACGCGGGCT
  AGAGGGGATG GAATATGCGG GCAAGAGAGG ATGAAGTATG CGGGCGGGAG AGGGCGTGGA
  GTAAGCGTGG ACACCGAGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48076047	NES11870384	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31663428					SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48076047	NES11870384	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119455881 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17911	CpG island 17911	within coordinates
Fbxl14	F-box and leucine-rich repeat protein 14	748 bp upstream
Rr637690	regulatory region 637690	682 bp distal
Rr637691	regulatory region 637691	258 bp proximal
Rr637692	regulatory region 637692	1473 bp proximal
Tssr58502	transcription start site region 58502	560 bp upstream
Tssr58503	transcription start site region 58503	584 bp upstream
Tssr58504	transcription start site region 58504	611 bp upstream
Tssr58505	transcription start site region 58505	825 bp upstream
Tssr62722	transcription start site region 62722	1539 bp downstream
Wnt5b	wingless-type MMTV integration site family, member 5B	Intron