rs31663426 SNP Detail

Summary

• ID
  rs31663426
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119455827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACATACAGA TGTATTAGGT
  ATCCGTACAG CTGGGCCGTG CAATCTACAG TCTAAGTGGC CGAGGAAAAA GACAAAACCT
  GGTGTAGGTT AGAGCGCAAG GCAGGGGCAG AAGCAGTGGG AAGTTTTGAC ACAAAGTTGA
  AAGGGAAAGG AACTCACATG GGTGTATGGA AACAACAAGA TTGTGGAAGG CAGGCACACT
  R
  GACAACTTCC AGAAATTTCT AGAACGAGAG CTGTCAAACT ATGCTGACTA AAAGCCACTT
  TCTCCACCAA ATTAAGACTC ACTACTAAAG AGAAAGGAAT GGTGGGAAGG CCGCCCGACT
  GGGGCAGTGG GTGTGGTGAG ATGGTTAAAG GCGCTCTGAG AAGTAACGCG GGCTAGAGGG
  GATGGAATAT GCGGGCAAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48076045	NES11870383	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31663426					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48076045	NES11870383	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119455827 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17911	CpG island 17911	2 bp proximal
Fbxl14	F-box and leucine-rich repeat protein 14	802 bp upstream
Rr637690	regulatory region 637690	628 bp distal
Rr637691	regulatory region 637691	312 bp proximal
Rr637692	regulatory region 637692	1527 bp proximal
Tssr58502	transcription start site region 58502	614 bp upstream
Tssr58503	transcription start site region 58503	638 bp upstream
Tssr58504	transcription start site region 58504	665 bp upstream
Tssr58505	transcription start site region 58505	879 bp upstream
Tssr62722	transcription start site region 62722	1593 bp downstream
Wnt5b	wingless-type MMTV integration site family, member 5B	Intron