rs3165937 SNP Detail

Summary

• ID
  rs3165937
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:75678676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTGCCCCTC ACACCTATGT ATCAGGTTGT CTTCAACCCT
  GAGAAATCCC CTCCAACCTG GAAGGCTCAG AGAGGTTTCC CCAGCCAGCA GTGAGCTCTG
  R
  GCACTGGCTG TCTCCCACTT GAGATGGCCC TGGCCTTTGG GACCACTGTT GCTCCAGCAT
  AGTTCTCAAT CCCTGAGGAA ATCTCCCCAC TCACAGATT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38563455	mCV23198009	ABI	CRAMUS_MOUSE	f	SNP		G	A				A		G
ss47905967	NES11931878	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	G	A		G	G	A	A	G	A	G	G	G
ss147174682	ENSMUSSNP4373935	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs3165937					SNP	G	G	A	A	G	A	A	G	G	A	A	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47905967	NES11931878	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:75678676 () rs orientation: forward

Symbol	Name	Function Class
Gm65903	predicted gene, 65903	within coordinates
Tssr94142	transcription start site region 94142	877 bp downstream
Tssr94143	transcription start site region 94143	300 bp downstream