rs3165931 SNP Detail

Summary

• ID
  rs3165931
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:75788523 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTAC ATACAGCAAT AACCCCCCCC
  C
  CACACACACA CATAAATATT GCAAC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323363298	CHEV_10_75415434	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs3165931					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:75788523 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1738	CpG island 1738	1360 bp distal
Cpgi1739	CpG island 1739	1705 bp proximal
Gm5134	predicted gene 5134	1825 bp upstream
Gm40698	predicted gene, 40698	1161 bp downstream
Gm65908	predicted gene, 65908	1742 bp upstream
Rr402000	regulatory region 402000	834 bp downstream
Rr434189	regulatory region 434189	1774 bp distal
Rr434190	regulatory region 434190	1273 bp distal
Rr434191	regulatory region 434191	1582 bp distal
Rr434192	regulatory region 434192	905 bp distal
Rr434193	regulatory region 434193	687 bp distal
Rr434194	regulatory region 434194	1427 bp proximal
Rr434195	regulatory region 434195	1905 bp proximal
Tssr94163	transcription start site region 94163	1832 bp upstream