rs31657941 SNP Detail

Summary

• ID
  rs31657941
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146797596 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACTGAATCC AGCTGAATTA TGTTAATGAA TTACCTATCT
  ATCTGACTTT GATATTTGGG AGGTCACTTC CTTTTTCAAA GCCATAGACA GGTTTAAAGA
  Y
  GTGTAATGAA GATTATTCTT TGAAGTGGGT TTCGTTACCG CTCCCTTAAA AACACAGAGA
  ATGAATTTTC CACCCAACTT GTTTTTTTGA CTTTGAAAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45556569	mCV23261508	ABI	CRAMUS_MOUSE	f	SNP								C		T
ss61096403	NES16600892	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		C	T	C	C	C	C	C	C	C
ss136047132	ENSMUSSNP1050603	ENSEMBL	ENSEMBL_Sanger	f	SNP		T								T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31657941					SNP	T	T	T	T	T	T	T	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61096403	NES16600892	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146797596 () rs orientation: forward

Symbol	Name	Function Class
Gm29771	predicted gene, 29771	within coordinates
Rr375880	regulatory region 375880	83 bp upstream
Rr587122	regulatory region 587122	441 bp proximal
Rr587123	regulatory region 587123	808 bp proximal
Rr587124	regulatory region 587124	913 bp proximal