rs3165369 SNP Detail

Summary

• ID
  rs3165369
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148642704 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGA GCTAGCTTTA AATGTGATTT
  W
  GATTGTACCC TCCCTCCAGT TCTCA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45688978	mCV24946540	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	T	A
ss148011347	ENSMUSSNP5107783	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		A
ss321421171	CHEV_4_147932356	CHEVERUD	SCREENING_POP	f	SNP						A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3165369					SNP	A	A	A	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148642704 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15305	CpG island 15305	within coordinates
Exosc10	exosome component 10	182 bp upstream
Mtor	mechanistic target of rapamycin kinase	564 bp downstream
Rr398859	regulatory region 398859	within coordinates
Rr604703	regulatory region 604703	within coordinates
Tssr40280	transcription start site region 40280	175 bp upstream
Tssr40281	transcription start site region 40281	242 bp upstream
Tssr40282	transcription start site region 40282	488 bp upstream