rs3165368 SNP Detail

Summary

• ID
  rs3165368
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148642509 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAGT GGTCATGAAC TTCAAGCCTG
  S
  GTGCTGTGGT CCTCTTTAAA AAAAA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45697482	mCV24946356	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	C	G
ss148011342	ENSMUSSNP261983	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		G
ss321421170	CHEV_4_147932161	CHEVERUD	SCREENING_POP	f	SNP						G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3165368					SNP	G	G	G	C	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148642509 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15305	CpG island 15305	123 bp proximal
Exosc10	exosome component 10	377 bp upstream
Mtor	mechanistic target of rapamycin kinase	369 bp downstream
Rr398859	regulatory region 398859	170 bp upstream
Rr604703	regulatory region 604703	within coordinates
Tssr40280	transcription start site region 40280	370 bp upstream
Tssr40281	transcription start site region 40281	437 bp upstream
Tssr40282	transcription start site region 40282	683 bp upstream