rs3165364 SNP Detail

Summary

• ID
  rs3165364
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148641180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAA GGGAAGAAGA AGATTGGTAA
  Y
  CCTGTAATCG AGTCTGGGCA GAGAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45699544	mCV24946321	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss148011307	ENSMUSSNP5195727	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss321421163	CHEV_4_147930832	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3165364					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148641180 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15305	CpG island 15305	1452 bp proximal
Exosc10	exosome component 10	1706 bp upstream
Gm23318	predicted gene, 23318	919 bp downstream
Mtor	mechanistic target of rapamycin kinase	Intron
Rr398859	regulatory region 398859	1499 bp upstream
Rr604703	regulatory region 604703	1216 bp proximal
Tssr40280	transcription start site region 40280	1699 bp upstream
Tssr40281	transcription start site region 40281	1766 bp upstream