rs31651147 SNP Detail

Summary

• ID
  rs31651147
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121089105 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCTGTGTGG TGGGGGAGGG GGGAACTACT TGGTCCAACA
  CTTTTTCAAG GCCCAAAATA AAAAATACTA CAATGAGTAT AAAGTAGATG TGTCAATCAT
  K
  TCCCCCAGGG GAGAAGATGG GAGGCAAGTT ATAGGTAATC CCTGAAGTGC CCACTGCAGC
  GAGCTCACCA CATTCCTTCC TAATTCATTC TAGAACCCG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J
ss45556484	mCV25270601	ABI	CRAMUS_MOUSE	f	SNP	G	T
ss135717702	ENSMUSSNP6676906	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J
rs31651147					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121089105 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Alg14	asparagine-linked glycosylation 14			Intron
				Noncoding-Transcript-Variant
Rr584041	regulatory region 584041			1159 bp distal
Rr584042	regulatory region 584042			1039 bp distal