rs31648422 SNP Detail

Summary

• ID
  rs31648422
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119095123 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGTTTTTC CCTCTTTTCC
  TTTCGAAAAA AAAAGAAAGA AAGAACAACT CGTGGCCTTT TTAAAAAATA AATAATAGAA
  ACAATAGAAA TAGAAGCCAT TTACTAAGAA GTAAAAGGCA CTCCCAAAAA TGGGATTGGG
  TTAGTGAGCT GGGAAGTCGC ACACACTCAG AAGCCCTGGG CCGCTTCTCC TAAGGCTTCA
  Y
  AGGTCATTTG CACTGCACCC ACCTTCTTCC ACATTAGCAC AGCTGCAGCT TTTTCTATGC
  TTTCTCTGCT TGTAGCACAT AGCCCAGATG TGGCAAACAT TCCTTTTTTA ACGTTTTGTT
  TGTTTGTTTG TTTGTTTGTT TGTTTTTTAG TTTTGTTTTT TTTGTTTTTT TTTTTTTTTT
  TGGTTTGTGG TTTTGGTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48073605	NES11880620	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31648422					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48073605	NES11880620	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119095123 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cacna1c	calcium channel, voltage-dependent, L type, alpha 1C subunit			Intron
				Noncoding-Transcript-Variant
Rr637595	regulatory region 637595			1662 bp distal
Rr637596	regulatory region 637596			392 bp proximal