rs31644049 SNP Detail

Summary

• ID
  rs31644049
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:153440541 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAAGAAAA TTAAATGCCA
  CGAGGGGATA TTTTACCTTG AGAAAGTGCT CATTTGGTTC ACGGATTTGT CTGAATAAAA
  CGGAAACACT CGAAGTGACT GACAAGATTT ACGAAGAGTG TGAAATTTTA TGGTAAAGCG
  GTCCTGGTAG ATGTGAATGC GACTCCGCCT AGCTCCCGCG ACCATGTTAC CACAGAGTAA
  Y
  ATAAAAAGGG TGACTGTCCT GGGTTATGCT GGGGGTGGGA GGGACTCTGA ACCTAGGCGA
  GCCAAGCCTT CTCAACAGGC AGCTGGCCTG CCTCTCCTGA TGCCAAGGCT GGCAACTGTA
  TCTTTTGTCC TTCAAAAGTT AACAGGCAGA AGCAATCTAC CTCTGCTCAC AGACACCTGG
  AAACATCAAA CACAGCATGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45554880	mCV23504381	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C	C
ss136111944	ENSMUSSNP3567184	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31644049					SNP	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153440541 () rs orientation: forward

Symbol	Name	Function Class
Rr587743	regulatory region 587743	1831 bp distal
Rr587744	regulatory region 587744	460 bp distal
Rr587745	regulatory region 587745	1926 bp proximal
Tssr36241	transcription start site region 36241	975 bp upstream