rs31643526 SNP Detail

Summary

• ID
  rs31643526
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:171018041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGATTTAT CTGTGTATTT
  AATGTATGTG AGTACACTGT TTCTGTCTTC AGACCCACCA GAAGAGGGCA TCAGATCCCA
  TTACAGATGG TTGTGAGCCA CCATGTGGTT GCTGGGAATT GAACTCAGGA TCTCTGGAAG
  AAGAATCAGT GAGTGCCCTC TCTCCAGTCC CCTGTTTAGT TTTGTTTTGG TGTTTTGACA
  Y
  GGGGTCTCAA GTAGCTCAGG CTGAATTCCT GATCTTCTTG CTATAACCTC CTAAATACTA
  AGATTATAGG CCCACACCAC CACATCTAGC CACCAAGTCT AGGCCTCTGG GCCTTTATTT
  AAGGCCACTT TGAAGGAATG CAGATTTCAT TTAGAGAGAG AGGGGGCAAG GGAGAGGGAG
  GGAGGGCATT CGGTGTTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45054615	mCV24421016	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss146156081	ENSMUSSNP2089987	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
ss320116992	CHEV_1_173120603	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs31643526					SNP	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171018041 () rs orientation: forward

Symbol	Name	Function Class
Gm70111	predicted gene, 70111	within coordinates
Pcp4l1	Purkinje cell protein 4-like 1	Intron
Rr423235	regulatory region 423235	1836 bp distal
Rr423236	regulatory region 423236	801 bp distal
Rr423237	regulatory region 423237	387 bp distal
Rr423238	regulatory region 423238	126 bp distal