rs31643467 SNP Detail

Summary

• ID
  rs31643467
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:102028081 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGG CTGGGGATAT AGCTCAGTTG
  K
  TATAGCACTT GCCCAACATG AACCA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45555415	mCV23806187	ABI	CRAMUS_MOUSE	f	SNP	G	G	T
ss135554079	ENSMUSSNP6605689	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		T
ss320854490	CHEV_3_101924688	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31643467					SNP	G	G	T	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102028081 () rs orientation: forward

Symbol	Name	Function Class
Casq2	calsequestrin 2	Intron
Rr582181	regulatory region 582181	312 bp proximal
Rr582182	regulatory region 582182	317 bp proximal
Rr582183	regulatory region 582183	1396 bp proximal
Rr582184	regulatory region 582184	1414 bp proximal
Rr582185	regulatory region 582185	1479 bp proximal