rs31643328 SNP Detail

Summary

• ID
  rs31643328
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:149054797 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTGA ACAAAGCAGA AAGCTCTAGT
  Y
  TTTGGTGCTT GGCTGACTAG CTTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45554668	mCV24057758	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss136070153	ENSMUSSNP1501884	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss321018542	CHEV_3_149012124	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31643328					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:149054797 () rs orientation: forward

Symbol	Name	Function Class
Gm30382	predicted gene, 30382	within coordinates
Rr587309	regulatory region 587309	1599 bp distal
Rr587310	regulatory region 587310	1568 bp distal
Rr587311	regulatory region 587311	196 bp distal
Rr587312	regulatory region 587312	within coordinates
Rr587313	regulatory region 587313	434 bp proximal