rs31642460 SNP Detail

Summary

• ID
  rs31642460
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145122261 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTTGTAC TGGTTGCGAA
  CATAATGAAT TTATTTGATT TTTATATGTG GGCCACATGT AAACAAAGGA TGCAACCAGA
  AATTATCATT TTCCCTCTAG CAAACACTTG AGATTATTAC CAGGAAACAT TTCTAAGAAC
  AATGAAGTAT TTACTTTGTG TGCAGTATTT CTCATTGAGA CAAGATATTG TGCATTTGAG
  Y
  GCAGCCTCAC TTATGATTGG CTCCTGGTTT GTTTGTTTTT TTTTCTTTAG CATAAGATTA
  AGACATACAA GGCATGATAG TAATACAAGA AAGAAAGGAT CATGTGGCTG GCTATTATCT
  CCTCGTGGCA AACGATGTCT TCACTTTTCA AGGGAGCTTT CCGGGCTTCT CTGCACTGTG
  TTTTAAAGGC ACTGTCCTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45555314	mCV23543957	ABI	CRAMUS_MOUSE	f	SNP		C					T		T
ss61093867	NES16613562	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		T	T	T	T		T	C	C	T		C
ss136038401	ENSMUSSNP3645333	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							T
ss321008285	CHEV_3_145079470	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31642460					SNP	C	C	C	C	C	C	T	T	T	T	T	T	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61093867	NES16613562	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145122261 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9530034A14Rik	RIKEN cDNA 9530034A14 gene			within coordinates
Col24a1	collagen, type XXIV, alpha 1			Intron
				Noncoding-Transcript-Variant
Rr586779	regulatory region 586779			1408 bp proximal
Rr586780	regulatory region 586780			1528 bp proximal