rs31641639 SNP Detail

Summary

• ID
  rs31641639
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:96013403 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACTT GTAGTTAAAT GTTGGCAGTA
  Y
  ATAACTTACA TAGGAACACA TTCTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45554847	mCV24943137	ABI	CRAMUS_MOUSE	f	SNP		C	C					T		T
ss46779617	NES10725625	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	T	T	C		T	T	C	C		T	T	C	T		C
ss135513859	ENSMUSSNP4825731	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							T
ss320841460	CHEV_3_95910014	CHEVERUD	SCREENING_POP	f	SNP													T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31641639					SNP	C	C	C	T	T	T	C	T	T	T	C	C	T	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46779617	NES10725625	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:96013403 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13535	CpG island 13535			984 bp distal
Gm30044	predicted gene, 30044			1735 bp upstream
Otud7b	OTU domain containing 7B			Intron
				Noncoding-Transcript-Variant
Rr581150	regulatory region 581150			1710 bp distal
Rr581151	regulatory region 581151			1554 bp distal
Rr581152	regulatory region 581152			178 bp distal
Tssr30678	transcription start site region 30678			1602 bp downstream
Tssr30679	transcription start site region 30679			1520 bp downstream
Tssr30680	transcription start site region 30680			1264 bp downstream