rs31641071 SNP Detail

Summary

• ID
  rs31641071
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95872219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ACAAATGGTT GTAAGCCACT ATGTGGCTAC TGGCAGTCAA ACCCAGGTCC TCGGTAAGAG
  CAGCCGCAGT GTTCTTAATA GCCTAGCCAC AGTGGGGTGG TGGTGGCGCA TGCCTTTAAT
  CCTAGTAGCA CTTGGGAGGC AAAGGCAGGG AGATCTCCGA GTTCAAGGCC AGCCTGGTCT
  ACAGAGTGAG TTCCAGGACA GCCAGAGCTA CACAAGAAAC CTTGTCTCAG ATGCCCCCCG
  CCAAAACAAA AACAAACAAA CAAACAAACA AACACCCCCA AAAAACCAAA AAAAAGTCAT
  Y
  TTTCCAGTCC CCTTCTTCTT TTTTTTTTTA CTCTAGCCAA GCCACGCACA TTTCTAAGTT
  TGAGTTTTAA ATGTATGTCC TAAACCAGCC CTTTAAAAGA TAAAAGTCTA AAGACTGTGA
  TTTGCTCTAT AGTGTGTTCA GAAGATTGTC TAGTTGCATT TAATTAGAGA GAGAGAGAGA
  GGTAAGGCCA ATAGAGACAG CCAGTAAAGC AACAGCTTCC GAAGTGGAGG CAGGGGGTGA
  TCACAGCTGC TGGCCTGGCT AACTGACTCC ATTTCAAGGT CCTGTGAACA GGAGCTTGCA
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45555693	mCV27558392	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31641071					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95872219 () rs orientation: forward

Symbol	Name	Function Class
Gm20940	predicted gene, 20940	519 bp upstream
Rr581104	regulatory region 581104	943 bp distal
Rr581105	regulatory region 581105	1017 bp distal
Rr581106	regulatory region 581106	258 bp proximal
Rr581107	regulatory region 581107	1090 bp proximal