rs31638666 SNP Detail

Summary

• ID
  rs31638666
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:83696317 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGTGGGTG ATGACGTAAA
  GGCACATCCT ATAGGCTGGA TGATTGACTG GGTGTTTCTT CATTGTATGC TTGAGTAAAT
  CTACACTTGA TGTTAGGAGA GAGGTGCCCT CTGAAGGTAG AGGGCAAAGG TACGTTGTGA
  GTGGTCTCCC AAGAGACCCT ACAGGTCCTG GAGCACCACC CTGAGGACCA TAAAGTTCTG
  Y
  ATACTCTTCC CTGCGGGACT TCTCAGCTTT GTTATCTTTG AAAGTACTGA AGGTGGAGGA
  ACAGTGGACC CGGGAAACAA GAAAGCTCCA AGCTCATCGT GTGGGCTGCC AACCAGACTC
  TGTTCTCCTA ATGGACCCCC TCTACCAGAG AGCTAAAAAG GAAACCTCTT TCTGCCTCCC
  CCTCCTTCCT TCTGTCTATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45554409	mCV22786000	ABI	CRAMUS_MOUSE	f	SNP		T	C					C		C
ss51559295	NES14677642	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C		C	C	C	C	C	C	C	C	T
ss135417537	ENSMUSSNP5769574	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31638666					SNP	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51559295	NES14677642	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:83696317 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13301	CpG island 13301	507 bp proximal
Gm7115	predicted gene 7115	715 bp upstream
Gm26771	predicted gene, 26771	within coordinates
Gm66689	predicted gene, 66689	264 bp upstream
Rr578903	regulatory region 578903	399 bp proximal
Rr578904	regulatory region 578904	919 bp proximal
Rr578905	regulatory region 578905	1222 bp proximal
Rr578906	regulatory region 578906	1351 bp proximal
Tssr33830	transcription start site region 33830	930 bp downstream
Tssr33831	transcription start site region 33831	963 bp downstream