rs31637550 SNP Detail

Summary

• ID
  rs31637550
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:45330412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TTGAGTTTTC TCAGGGAGGG CAGAGGGCCT GGGTCGCTTT TATTTGGCTA GGAGGACTCC
  ATTGTCACCC CTATAGTCCA GGGGATGGCA CCTCAGAGAC CAAAAAAGTC AGCGAGGCAG
  GACCAGTGGA GAAGCCTGGC TTTGCTTTGA TGGCCTGGAC TCTGGCCTCC GTGACCTGCA
  GAATGCAGCA GAGCCCCCAG CAGGCAAACC CTACAAAGGC AGAAGGCGGG CTCCACAGCA
  AAATCATTTC ACTTGCCCTA TGCCGCTTTC GCCGCTAGGA AACGCCTGCA ACCCACGTTT
  Y
  TGGAAATGGT CCCCATTCAA ACACAGCTGC CACCATTTAA AAAAAAAAAA AAAAAAAAAA
  AAAAAAAAAG CGGCTCAAGT GTTACAGTGG ATGCACTGAT TATTTACAGG GAAATCTCAG
  GGAAATCTGG CCATCTCTTC ACGTTCTCAT CTCCACCTCG GCAAGCTCGC CGGCGTTCTG
  CAAACGCCCT AAGTCAGCTC GAACTTCAAG CTCCTTTCCG AGACACAAAC CTCCGCCAGC
  ACATCTGCAC TGTCATTCCG CAGCGTGTCT CTCACACGAA AACATGCAGA CACACAAGTG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45554403	mCV22745699	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs31637550					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:45330412 () rs orientation: forward

Symbol	Name	Function Class
2610316D01Rik	RIKEN cDNA 2610316D01 gene	within coordinates
Cpgi13121	CpG island 13121	within coordinates
Cpgi13122	CpG island 13122	554 bp proximal
Cpgi13123	CpG island 13123	1938 bp proximal
Rr576050	regulatory region 576050	206 bp distal
Rr576051	regulatory region 576051	12 bp distal
Tssr33087	transcription start site region 33087	35 bp downstream