rs31636135 SNP Detail

Summary

• ID
  rs31636135
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:106453328 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAGTGGTAT ACAGCTTTCT GACCTCTGCC ATTACTTAAA
  GTAAAATACT AATGGCTGAG ACTATTAGGG AAGGGACCAT AGAAGAAAAG AGAAAGAAAA
  R
  CAAGAGAAAG AAAAATAAAT AAATTAATAG GATCATAGGA ATAAGTTCAG CATTATTTAA
  CAAATGATAC ATAAAACATG TTTGTCTGGG GGCAGGGGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45554286	mCV23490930	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss135579909	ENSMUSSNP1516790	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G
ss320863780	CHEV_3_106348930	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs31636135					SNP	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:106453328 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cept1	choline/ethanolaminephosphotransferase 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi13666	CpG island 13666			1145 bp proximal
Dram2	DNA-damage regulated autophagy modulator 2			1786 bp upstream
Rr375539	regulatory region 375539			1220 bp upstream
Rr582853	regulatory region 582853			773 bp distal
Rr582854	regulatory region 582854			41 bp distal
Rr582855	regulatory region 582855			846 bp proximal
Rr582856	regulatory region 582856			1560 bp proximal
Rr582857	regulatory region 582857			1871 bp proximal
Tssr31114	transcription start site region 31114			113 bp downstream
Tssr31115	transcription start site region 31115			1685 bp upstream
Tssr31116	transcription start site region 31116			1715 bp upstream
Tssr31117	transcription start site region 31117			1810 bp upstream
Tssr34980	transcription start site region 34980			149 bp downstream
Tssr34981	transcription start site region 34981			1552 bp downstream
Tssr34982	transcription start site region 34982			1570 bp downstream
Tssr34983	transcription start site region 34983			1690 bp downstream
Tssr34984	transcription start site region 34984			1714 bp downstream