rs3163545 SNP Detail

Summary

• ID
  rs3163545
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:100905216 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GCACC GCAGGATCCG GAGCAACCAG
  Y
  GCCCTCCCCT GAGAGGTCAT TTAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45419105	mCV24922282	ABI	CRAMUS_MOUSE	r	SNP	A	A	A	G
ss135543622	ENSMUSSNP1567469	ENSEMBL	ENSEMBL_Sanger	r	SNP	A	A		G
ss320850546	CHEV_3_100801823	CHEVERUD	SCREENING_POP	r	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3163545					SNP	T	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100905216 () rs orientation: reverse

Symbol	Name	Function Class
Cd101	CD101 antigen	Intron
Rr581939	regulatory region 581939	within coordinates
Rr581940	regulatory region 581940	1291 bp proximal