rs3163440 SNP Detail

Summary

• ID
  rs3163440
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:100870773 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TTTCA TTATCTATAG GATCCTAACC
  S
  TAAAGAACTC TCTGTAACCA GTAAG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135543289	ENSMUSSNP4689692	ENSEMBL	ENSEMBL_Sanger	r	SNP	G	C
ss320850394	CHEV_3_100767380	CHEVERUD	SCREENING_POP	r	SNP			G	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs3163440					SNP	C	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100870773 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm66499	predicted gene, 66499			529 bp upstream
Rr581933	regulatory region 581933			699 bp proximal
Rr581934	regulatory region 581934			791 bp proximal
Ttf2	transcription termination factor, RNA polymerase II			Coding-NonSynonymous
				Noncoding-Transcript-Variant