rs3163439 SNP Detail

Summary

• ID
  rs3163439
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:100871596 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CAACA AAATTGCAGG CCTGAATCGA
  R
  TTCCAGGGAA TCCAGTGCCA TCTTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45443096	mCV24922246	ABI	CRAMUS_MOUSE	r	SNP	T	T	C	T	C
ss135543292	ENSMUSSNP1034055	ENSEMBL	ENSEMBL_Sanger	r	SNP		T	C
ss320850397	CHEV_3_100768203	CHEVERUD	SCREENING_POP	r	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3163439					SNP	A	A	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100871596 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm66499	predicted gene, 66499			within coordinates
Rr581933	regulatory region 581933			within coordinates
Rr581934	regulatory region 581934			11 bp distal
Ttf2	transcription termination factor, RNA polymerase II			Intron
				Noncoding-Transcript-Variant