rs31630809 SNP Detail

Summary

• ID
  rs31630809
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:118955292 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAACCTGAC AGAGGTAAAG
  GCCACATCTC AGAGCACTGT GCAAACCCAG AGGGGCTTGC TTCCTTCCTT GGCCTGGAGT
  GCTAACCTCA GTTCTTGACT GGATCAGGAA CAGCTAACCC CTGTAGTCTG ACAGGCAGAA
  AATGGCAAAT GTTCTTCTCC CCTGCACAAT ACTTTCCTCT CCAGAAATGC TCAGGCAGAT
  M
  CACTTCCCAG CGGTAACTGT AGAGTCAGGC GCTTGTGGCT TCTTTTATAA CGACGCAACC
  ACGCAGAGAT TACTGTTGTC ATAGTAGAGA GGGCAGAACA TGCAGACTAT CAAAATCGGT
  GACTGGTAAA TATCTTTGAG ACATTGTATC TGAAGTCCAC TGATTTGGTT TGGGTAGCAA
  AGCCTCAAGG ACCCATCATG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48071885	NES11869546	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C		C	C	C	C		A
ss321926484	CHEV_6_118928349	CHEVERUD	SCREENING_POP	f	SNP										A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31630809					SNP	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48071885	NES11869546	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:118955292 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cacna1c	calcium channel, voltage-dependent, L type, alpha 1C subunit			Intron
				Noncoding-Transcript-Variant
Gm50599	predicted gene, 50599			within coordinates
Rr637560	regulatory region 637560			within coordinates