rs31629778 SNP Detail

Summary

• ID
  rs31629778
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:118954413 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGGAGGCA GGGCTATTGT
  TATCCGGGAT TTGTAGTGAA AAAAAACTGA GTCAAGTCAC CCACATCACA GAAGTCCAAA
  AGAAAAAGAA AAAAAAAAGG AGTGCAGAAT ACCTTATACA TCCCTTCTGG TCAGTGAGAG
  CCATCAAGGA CAGCAAGTGA AGGACAGCAG ATGGTGGCAG GAAAGGGGAC AGGCCAGTGG
  R
  ATGGGTCACT GACTCTCAAC CCAGGCATGG CACAAGTCAT CACCACACTG TGGGCACCTG
  TCCCTTAAAG GCAGCATCAG AGGACATAGG GGTCTTGTGA GGAACTGCCA TTGAAAACCA
  ACCCAACCTC AGGACCCCGG AAAGAGAAGC CAGTTTCTAT CCCTTAGCCT GTGGCTGCCA
  CTTAAGATGT GAGGGGGACG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48071871	NES11869538	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31629778					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48071871	NES11869538	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:118954413 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cacna1c	calcium channel, voltage-dependent, L type, alpha 1C subunit			Intron
				Noncoding-Transcript-Variant
Gm50599	predicted gene, 50599			within coordinates
Rr637560	regulatory region 637560			within coordinates