rs31628881 SNP Detail

Summary

• ID
  rs31628881
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:118953230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAAGCCTG AAATTAAGAG
  ATCATCAGCA ATGGCAAGAA TCCCATATTC ACATCATTGT AGCAAGGACT GCTCCAAGAA
  TCCCGTATTC ACATCATTGT AGCAAGGACT GCTCCAAGAA TCTCATATTC ACATCATTGT
  AGCAAGGACT GCTCCAAGAA TCCCATATTC ACATCATTGT ACCAATGACT GCTCCCCATT
  R
  CTAACTAGAC AGTGGACTCG CTTAAGGTTA CTCACAATGA TTAATGCCAC TGATCTCCTT
  TAGCAGGAGT GATGAAATAC TTACTTCATC TGCTGAAAAC GAACAAATCA TCCACTGTGT
  ACTAGCACAG AGGATGCCCA CAGATGCACT GGCAAATACT GTGGGGACCT GAACGCACGG
  AAGGCAGGAG ACATAAAGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss48071863	NES11869564	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31628881					SNP	A	A	A	A	A	A	G	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48071863	NES11869564	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:118953230 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cacna1c	calcium channel, voltage-dependent, L type, alpha 1C subunit			Intron
				Noncoding-Transcript-Variant
Gm50599	predicted gene, 50599			within coordinates
Rr637560	regulatory region 637560			1129 bp proximal