rs3162667 SNP Detail

Summary

• ID
  rs3162667
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:47623794 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTTATTTA TGACTGTCCT
  CAATAAGAAG TAAGTCCACT GGGCGTAAAA CACTTCAGAG TTAGCAATAC ACATTGTTGT
  AATCTAAATC TTGATTATGa tatatatata tatatatata tatatatata tatatatata
  tatatatata tatatGCTGT GGATTAGATT AAGTATATTG GATTGAAAGA GACGACATAC
  R
  AGGGTTTTCA CAATTTTTAA ATATCAACAA GTCATTTATT TTTTGTGATG ATTCATAAAT
  ATCAGTGCAA ATATAACCCC AAACTTAAAA TTATTAATAG GAAAATACAG ATTTAAATAT
  GAAAATGTTA AGGGATTAAA AATGCAAGTT ACTGCAAGAC AAATAGACAC TATATGAAAT
  ATTTTTTATC AGTCAAACTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49593061	NES12914135	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	G		G	A	G		A
ss320735188	CHEV_3_47473281	CHEVERUD	SCREENING_POP	f	SNP						G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3162667					SNP	A	A	A	G	G	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49593061	NES12914135	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:47623794 () rs orientation: forward

Symbol	Name	Function Class
Rr576075	regulatory region 576075	101 bp distal