rs31625973 SNP Detail

Summary

• ID
  rs31625973
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:118947489 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGAGACAC AAGGCAATGT
  GGAAGTGAAG CACCTTGGCA GGCTCCTTAA CCAAATTTTA CAGGACTTAT AGCCCATGTG
  CCCTGAATGG ATGGGGAAGA CAGGACATAC CTGGCTTTGG AATATTAGCA ATGGGGCAGT
  GGTCTGGGGA AGGGAGACTC CTCCAGGCTT TTTTGGCTGT GCTGAGTCTG CCTAGCACAG
  R
  TTCCAACTGA ACCCTTCCCT TCCAAACACA AGCAAACAAA CTTCCATTTT GCCCATTTTA
  CATCCACAAC GTTCCACTGT TGCTTCCAGC ATCTGGTTTT TCCCAAAGAG AATTTTTCAG
  GCTAGACGAT GGACACAGAG CAGGCAATGG GGACAGCAGG TGAGCAGGCC GGCTGCTGGC
  CACTGAGCAG TGGTCCCCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	NOD/ShiLtJ	PWD/PhJ
ss48071835	NES11869681	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	NOD/ShiLtJ	PWD/PhJ
rs31625973					SNP	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48071835	NES11869681	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:118947489 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cacna1c	calcium channel, voltage-dependent, L type, alpha 1C subunit			Intron
				Noncoding-Transcript-Variant
Rr637559	regulatory region 637559			1294 bp proximal