rs31625970 SNP Detail

Summary

• ID
  rs31625970
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:118947371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGTGTGT GTGTGTGTGG
  GGGGGGGGGT GGTGGTGGTA AAATGAAGGC CGAAGAGGGT TCAGGAACTT TGGCATCATG
  CTAAGAAGTA ATAGTGGTGT CAGGAAGGAC TCGGGAGTTG GGAGACACAA GGCAATGTGG
  AAGTGAAGCA CCTTGGCAGG CTCCTTAACC AAATTTTACA GGACTTATAG CCCATGTGCC
  M
  TGAATGGATG GGGAAGACAG GACATACCTG GCTTTGGAAT ATTAGCAATG GGGCAGTGGT
  CTGGGGAAGG GAGACTCCTC CAGGCTTTTT TGGCTGTGCT GAGTCTGCCT AGCACAGGTT
  CCAACTGAAC CCTTCCCTTC CAAACACAAG CAAACAAACT TCCATTTTGC CCATTTTACA
  TCCACAACGT TCCACTGTTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	NOD/ShiLtJ	PWD/PhJ
ss48071831	NES11869679	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	NOD/ShiLtJ	PWD/PhJ
rs31625970					SNP	C	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48071831	NES11869679	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:118947371 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cacna1c	calcium channel, voltage-dependent, L type, alpha 1C subunit			Intron
				Noncoding-Transcript-Variant
Rr637559	regulatory region 637559			1412 bp proximal