rs3162574 SNP Detail

Summary

• ID
  rs3162574
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:37520678 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CTTGATGGTT GCTATTCTGA CTGGTGTGAA GTGGAGCCTC AGTTTAGTTT TGATTTGCAT
  TTCCCTCCTT GTTAAGGATA TTTAATATTA TTTTTCTGTA CTTACTGCCT TCTTGAAAAC
  TGTCTGTTCC ATTCAAATTG ACCAGATATT GACTGACTGG GGGGACAAGT TTTCTTTTTA
  ATTCTTTACC TTTATGAATT TTACTCCTCT CTGATTTATA CTTGGCAAAG ATTTTCTCTC
  AATCTGTAGC CTGCCCCATC AGATGATTAT TTTTTATGTA GAAGCTTTTT AATTTTATTT
  M
  ATTCTATTTG CTTACTTTTT ATTGTTACTA CCTAAGTTGT TTCTATCCTT TCACAAAGTA
  ATTGCATATT ATGTCTCAAA CAGTGCCTTC CCCATCCTTG TAGTTTCTAA GTGTCAGGTC
  TTTAGTCTTG ATTTCATTTT TTTATTTAAT TTTTTTAGAT TGTAGTATAA CTACATCATT
  CCTCCCCTTT TCTTCCAAAC TCTCCTATAT ACCCATTGTT ACATTATTTT GTTAGTTTTG
  TTGTCACATG CATATATATT CCTAAATATA ATCTACTTAG TCTGCTTGAT ATTACTTGTG
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45444056	mCV24336255	ABI	CRAMUS_MOUSE	f	SNP	C	C	A	C
ss134806413	ENSMUSSNP4878745	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C		A
ss320710310	CHEV_3_37365451	CHEVERUD	SCREENING_POP	f	SNP					C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs3162574					SNP	C	C	A	C	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37520678 () rs orientation: forward

Symbol	Name	Function Class
Afg2a	AFG2 AAA ATPase homolog A	Intron
Rr575484	regulatory region 575484	1824 bp proximal