rs31625399 SNP Detail

Summary

• ID
  rs31625399
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146048842 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGCCAGAG AGAGGTGATA
  CAATGTGTCC AGAGACAATG GCACACAATG GAAGACTGTA ACATTGTAGT TACAAAGTGG
  GATACATAGT AACAGTAGGA CAAGGCGAGG TACATTCATT ACTTCTGTTG TTGTGAGCAA
  GTATCTGTCA GAAGCAGCCT CAGGGAGGAA GGGTTGGTGC TGGCTCACAG TTTTGGGGAT
  Y
  CTCAGTCCAT CACAGTGGAT AAAGCATAGT GACTGTAGTA GCTTGGTCCC TGACAGAGGG
  TGAAGTGCCC TGTGGCTGGC CATAGCACAG AGCTGGGTGG AAGTGGAGAG TCTAATGAAA
  ACCAGAGTGG TTATCACCTT TCAGGTCCAC CCCTATTGAC CAACTTCCTA CAAATTCCAT
  AGTGTCAAAG GTTCTGGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45553451	mCV24237044	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T	T
ss136043376	ENSMUSSNP2276242	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		T
ss321010004	CHEV_3_146006051	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31625399					SNP	T	T	C	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146048842 () rs orientation: forward

Symbol	Name	Function Class
Rr587007	regulatory region 587007	595 bp distal
Rr587008	regulatory region 587008	617 bp proximal
Rr587009	regulatory region 587009	726 bp proximal