rs3162465 SNP Detail

Summary

• ID
  rs3162465
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:37604448 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACAA ACATATTCCA TATACTTCTG
  Y
  ACTGCCACTC AGGCTAGCTG TGGAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45465895	mCV24340855	ABI	CRAMUS_MOUSE	f	SNP		T	C				C	T
ss46911992	NES10796736	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	C		T	C	C		C	T	T	C		C
ss134807803	ENSMUSSNP3802957	ENSEMBL	ENSEMBL_Sanger	f	SNP			C					T
ss320710743	CHEV_3_37449221	CHEVERUD	SCREENING_POP	f	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3162465					SNP	T	T	C	T	T	C	C	T	C	C	T	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46911992	NES10796736	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37604448 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Afg2a	AFG2 AAA ATPase homolog A			Intron
				Noncoding-Transcript-Variant
D3Ertd740e	DNA segment, Chr 3, ERATO Doi 740, expressed			964 bp distal
Rr575499	regulatory region 575499			480 bp distal
Rr575500	regulatory region 575500			within coordinates
Rr575501	regulatory region 575501			398 bp proximal
Rr575502	regulatory region 575502			1977 bp proximal