rs3162463 SNP Detail

Summary

• ID
  rs3162463
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:37602971 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGC AAGTCTTATA TGCAGAGTGA
  A
  TGTCAGGACA TCCAAGGCTA CACTG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss134807785	ENSMUSSNP6464436	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss320710737	CHEV_3_37447744	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs3162463					SNP	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37602971 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Afg2a	AFG2 AAA ATPase homolog A			Intron
				Noncoding-Transcript-Variant
D3Ertd740e	DNA segment, Chr 3, ERATO Doi 740, expressed			286 bp proximal
Rr575499	regulatory region 575499			847 bp proximal
Rr575500	regulatory region 575500			1217 bp proximal
Rr575501	regulatory region 575501			1875 bp proximal