rs3162388 SNP Detail

Summary

• ID
  rs3162388
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:37571168 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATGC TGAACATGGT GGTATTTGCT
  A
  TTGATCTCAG CAGAGACAAA GTAGG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss134807246	ENSMUSSNP3036077	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320710574	CHEV_3_37415941	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs3162388					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37571168 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Afg2a	AFG2 AAA ATPase homolog A			Intron
				Noncoding-Transcript-Variant
Rr575494	regulatory region 575494			1126 bp distal
Rr575495	regulatory region 575495			1375 bp distal
Rr575496	regulatory region 575496			1270 bp distal