rs31623850 SNP Detail

Summary

• ID
  rs31623850
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:19216548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATAGCTAAG AATCACCACT TAGTTAATAG AAGTATTTAG
  CCCTCACGTG CTAAGAGCTG CTGCGGGCAC ACACTTATCC TAAATCCTTA ATGATTAAGC
  S
  GGGTTGAAAA GCAACTACCA CTATCAAACG CCGAGACCCG ATCTGGCTTC TCCTTGCAAT
  TATAACTGTA ACTCTTTTGG AATTGAATTA CCGTCTCCA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45552679	mCV22998933	ABI	CRAMUS_MOUSE	f	SNP	C	C	G
ss134665469	ENSMUSSNP529457	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	G
ss320678111	CHEV_3_19062384	CHEVERUD	SCREENING_POP	f	SNP				G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs31623850					SNP	C	C	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19216548 () rs orientation: forward

Symbol	Name	Function Class
Armc1	armadillo repeat containing 1	Intron
Cpgi13000	CpG island 13000	27 bp proximal
Gm65410	predicted gene, 65410	822 bp upstream
Rr397613	regulatory region 397613	619 bp upstream
Rr573944	regulatory region 573944	17 bp proximal
Rr573945	regulatory region 573945	447 bp proximal
Rr573946	regulatory region 573946	671 bp proximal
Rr573947	regulatory region 573947	925 bp proximal
Tssr32687	transcription start site region 32687	627 bp downstream