rs31623738 SNP Detail

Summary

• ID
  rs31623738
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116531740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGAA ATGTTACAAA GATTGTACAA
  R
  CCTCATGGAT ATCTGATGTC TGAGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45554002	mCV24029372	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
ss135671464	ENSMUSSNP4757980	ENSEMBL	ENSEMBL_Sanger	f	SNP	A			G
ss320896022	CHEV_3_116441009	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31623738					SNP	A	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116531740 () rs orientation: forward

Symbol	Name	Function Class
Agl	amylo-1,6-glucosidase, 4-alpha-glucanotransferase	1908 bp downstream
Gm54181	predicted gene, 54181	Intron
Gm64822	predicted gene, 64822	within coordinates
Rr583772	regulatory region 583772	687 bp distal
Rr583773	regulatory region 583773	333 bp distal
Rr583774	regulatory region 583774	585 bp distal