rs31622783 SNP Detail

Summary

• ID
  rs31622783
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104571672 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGTAACTC CAGCCTGAGC
  TGTAGTCCCA ACCCTGGGAA GGGCACAGTG AGGGTGGGGA AGTTATTTGA TGCCAGCCAG
  GGAGGGTAAG GAAGAAATCC CAAAAGAAAC AGCAGGCAAG TAGGAACAGA GCCTGCTCCC
  CCAGATGTCT GTAGCTCAGA GGTGGAGTGC TTACTTAGAA TGCATAATAT AAAGCCCTGG
  R
  TCGAATCAAA AAAGTTTAAG TCCTCACATC AACTATGTTT GCTTCTTTAG CCACTTTTCT
  ACCCTAGGCT GGAATACTTT TATTCCTCCC TCCCCGCTCC CTCTTCTCCT TCCTTCTTCC
  TTCTCAGCAG TTCTAGGGAT GGAGCCCAAC TGTTTGTCCC AGCCCAGCCC CTGGTCAGGG
  TCTTAAACTC CCTTGTTTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45553055	mCV24812403	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31622783					SNP	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104571672 () rs orientation: forward

Symbol	Name	Function Class
Gm29561	predicted gene 29561	217 bp upstream
Rr582565	regulatory region 582565	1917 bp distal
Rr582566	regulatory region 582566	679 bp distal