rs31619576 SNP Detail

Summary

• ID
  rs31619576
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:136004952 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGTCCAATT TTAAGGCCTC TTTTCATAGA TACCATTTTC
  TGAAATATAA AATATAAATG TAAACACACA CACACACACA CACACACACA CACACACACA
  Y
  ACATATATAT ATATATATAT TTGTTTTGTT TTCCCTTTCT ACCATATTAT TTTGAATTAT
  TTCTTCATGT TACTAATTAA CTCAAGATAT ATTTCAGCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45552712	mCV23952432	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs31619576					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136004952 () rs orientation: forward

Symbol	Name	Function Class
Bank1	B cell scaffold protein with ankyrin repeats 1	Intron
Rr398054	regulatory region 398054	1708 bp upstream
Rr585815	regulatory region 585815	1479 bp distal
Rr585816	regulatory region 585816	1730 bp proximal