rs31616436 SNP Detail

Summary

• ID
  rs31616436
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:101192746 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTAACCCT GGCTGTCCTG
  GAGCTAGCTC TGTAGACCAG GCTGGACCCT AACTCACAGA GATCCAAATG CCTTTGCCTC
  TCAAGAGCTA AGATTAAAGG CATGGACCAG TACTTTCCGG CTAGATATGA CTCCTTAATC
  TTGGGCTTCT CTCCCCCACA GGAGTCTAGG GACCCTGAAC TGTTCTGCCC AATAAGGGAA
  R
  GTAAAATCTA GGAACACATA GGACACCGTT ACACTCACAA CTCATGACAC ACCTCATTGG
  ATAGTATAGG CCTCATGAAC ATCCTAGTAG ACAAATCTGA TATGTTCCGA AATCTGTCAA
  GCCACAACTC AGTACCACAC ATGGAAATTC TCATGCTGTG AGACCTTGTT TCCTACATAA
  TACTATTTAA AATTAGTCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45552910	mCV22287081	ABI	CRAMUS_MOUSE	f	SNP		A	G						A
ss46813202	NES10715710	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	G	A	G	A	A	A	A	A	A	A
ss135546256	ENSMUSSNP5928766	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31616436					SNP	A	A	G	A	G	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46813202	NES10715710	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101192746 () rs orientation: forward

Symbol	Name	Function Class
Cd2	CD2 antigen	Intron
Rr581990	regulatory region 581990	1824 bp distal
Rr581991	regulatory region 581991	351 bp proximal
Tssr30894	transcription start site region 30894	1273 bp downstream
Tssr30895	transcription start site region 30895	1135 bp upstream
Tssr30896	transcription start site region 30896	1210 bp upstream
Tssr30897	transcription start site region 30897	1245 bp upstream
Tssr34779	transcription start site region 34779	1461 bp upstream