rs31612935 SNP Detail

Summary

• ID
  rs31612935
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:26691718 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTATGAACC AAGTGCTAAT
  AGCTTTGATG GGGTGGGCAA ATACCAGCTA GGGGTGGGCA AAACCCTTCT AAATGATTAT
  TCTGTCTTCA TTAATTTTAG AGTATTAAAG GAAACTCACA CATAGCAGGT GCATTCAGAG
  AGAAGGCTGG GGAGGTGCCG TAGCTCCCCG ATGGTGGGCC GAGCCTGGAG GCACGTGGTC
  Y
  GCTAAATGGG CGGGGCCACG TGGCTGGTCG TTTTTTTTTT TTTTTTTTTT TTTTTACTTC
  TAAGAGCTCT CTGAAGCTCC ACAGCAGGTT GGCCTGGGAT TGGGACCGTT GGCACGACAG
  ATGCTGTAGG TGGTAGTCAC TCGGCTCCTC TGACCCTAAA CCACACAGGT AGGAAGAGGC
  TGCTTTACCC TAAGAACAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45552186	mCV24231316	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss134696925	ENSMUSSNP5800281	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320687940	CHEV_3_26536491	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs31612935					SNP	T	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:26691718 () rs orientation: forward

Symbol	Name	Function Class
Gm65182	predicted gene, 65182	15 bp upstream
Gm65438	predicted gene, 65438	1239 bp downstream
Rr574324	regulatory region 574324	1644 bp proximal
Rr574325	regulatory region 574325	1878 bp proximal
Spata16	spermatogenesis associated 16	51 bp upstream
Tssr28597	transcription start site region 28597	49 bp upstream
Tssr28598	transcription start site region 28598	77 bp upstream