rs31610801 SNP Detail

Summary

• ID
  rs31610801
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:118828488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATAAGCTG GGAAAGAGAG
  CAGCAGGAGC TGTGGGGGTG GGCACAGGGA TATTTTCCTA AACCAATTAG CTGAAAACTC
  AAATACATGA GGCTCAGTTT GAATGGAGAG GATCGCAGGG ACCACACATC TTCATTAAAA
  TTCTCAGGGA CACTGAGAGT TACTGTATCA CTATCAACCT TTGGGGCCCT ATCTGTGGCT
  Y
  TCTACATTGT AGCAAACCTA CATCTGTTGT GGTCAGAACA AGGCGCTTTC CTGAGAAAGG
  CTTCCTTCCC AGGTCATGAG AAGCAGCCAA CAGCAGCCAA CAATATGCAT TCCTTCATCC
  TGATGTTCTA GATCAGTGGT TCTCACCCTG TGGTTCTCAC ATCAGCTATC CCATGTATCA
  GATATTCACA TTATGAGTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48070263	NES11871756	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31610801					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48070263	NES11871756	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:118828488 () rs orientation: forward

Symbol	Name	Function Class
1700080F18Rik	RIKEN cDNA 1700080F18 gene	within coordinates
Cacna1c	calcium channel, voltage-dependent, L type, alpha 1C subunit	Intron
Rr637542	regulatory region 637542	111 bp distal