rs31609045 SNP Detail

Summary

• ID
  rs31609045
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:118826926 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGGGATC TCCAAGTCCC
  TTTGAGGGGC ACAGGCCCAG TGATCTAGCT TCCATCCACT AGGCCCTGCT TCTTAAAAAT
  CCCATCACTT TCTAATAGCC CCAGAGGCTA CAGAGAAACG CTTAACACAC AGACCTTCAA
  CAACTAAAAT CTTACTGTCT CTCCATGTCA TGTCCTATGG CATGTTATGA TGAAGCAAGA
  M
  GGCCCTCAGC AGATACCAAG CAAGGGCTAG CACTACCAGC CAGAGTCCTC ACGTCATTAT
  ATATTACCCA GTACTCAGTT ATAAAAAGTG GAACATGGCC ACAGATGGAA AAGCAAAGGA
  AATAAAGCAG GTGGGGGAGG GGCAATTTTA CAACTATGGT CCCCACTCCC CTTCTAGAAT
  TGAGCTTCAA ACATGGAGCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48070235	NES11871776	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	C		A	A	A	A		C
ss321926239	CHEV_6_118799983	CHEVERUD	SCREENING_POP	f	SNP											C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31609045					SNP	A	A	A	A	A	A	A	A	A	C	C	A	A	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48070235	NES11871776	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:118826926 () rs orientation: forward

Symbol	Name	Function Class
1700080F18Rik	RIKEN cDNA 1700080F18 gene	within coordinates
Cacna1c	calcium channel, voltage-dependent, L type, alpha 1C subunit	Intron
Rr637540	regulatory region 637540	1937 bp distal
Rr637541	regulatory region 637541	1036 bp distal
Rr637542	regulatory region 637542	1220 bp proximal