rs31605716 SNP Detail

Summary

• ID
  rs31605716
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:118726601 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGTCCCCA TTCTGGCTGT
  CACTATGATA GCATCTTAGG GTCACATCTG GCTGGTGTGA TATCAATGAC TTGTAGTGAG
  GAAGAGGGAG GGAATGATAA AGGAAGATCA GAAAAGTACA CCAAGGCTGT CAGCAAAGCA
  AATTATACAT ATTCCCCTAT GCCTGCACCT GCCCTTAGTG TGATGCTACA GCTGGCTTTT
  Y
  CACGGTGACT GAAGGCAGGG GCTAAGATTC ACAGGATGAG ACTCTGGAGC CCAGTGCTAT
  ACAGTCACAT GGTCTATGGT CCATAGGTGG AGACTGCCTA TTTGCAGAGA CCTTTCTGTC
  CATGGCACAC CAGGGCAGAA AGTAATAGGT CCTTCAAGCA GAGTAGAAGG ACTAGTAAGG
  GCCTCCTAGG AAGTTGACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48069246	NES11873989	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31605716					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48069246	NES11873989	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:118726601 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cacna1c	calcium channel, voltage-dependent, L type, alpha 1C subunit			Intron
				Noncoding-Transcript-Variant
Rr637512	regulatory region 637512			within coordinates
Tssr62667	transcription start site region 62667			1357 bp upstream