rs31603962 SNP Detail

Summary

• ID
  rs31603962
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:118725554 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGCTTCTT CTTAAGGCTA
  TGGTTTCTTC TCCTCCTCCT CCTCCTCCTC CTTCTTCTTT CTTCTTCTTC TTCCTATTTC
  TTTCCTCTCC TCCTCCTTGT TTTTGTTTGC TTGTCTTACT TTTTACACTT GGACATTCTG
  GGAGTACATA GAGAGGCTTT GGTTTAAAGA GTTATTTCCT AAGAAAACTA AACAGAAGCC
  Y
  GAGTTTTACT TTAGTTTCTT TTCTCTAGAA ACTTCTATAA CGCCGTTTAG ATGTTTAAGA
  TGAATCTAGT TCTGGGGGTT CCACCCAGGC TACACAGAGC AGTCTCCGCT GCTCCTCTCT
  GGGTCCTCTA GACTTGAACT TTACACTTGA GGAGAGCTGC ATCCTTCTGA GAGGAAGGCC
  CATATTCCCT GGAAACTAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48069232	NES11873970	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31603962					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48069232	NES11873970	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:118725554 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cacna1c	calcium channel, voltage-dependent, L type, alpha 1C subunit			Intron
				Noncoding-Transcript-Variant
Rr637512	regulatory region 637512			752 bp proximal
Tssr62667	transcription start site region 62667			310 bp upstream