rs31599820 SNP Detail

Summary

• ID
  rs31599820
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121292256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTAACTCCT TCTTGGTAGT TTGAGCATAA AGTGATATAA
  TCTGAATAGT TTCTGAGATA AAGCCTGGCC CACAGAAGTA GCCTTCCCTG GGTGATAACA
  R
  TTATCATTAT CACTGTCGTT CTTATATGAT CACTATCCTG TATTCCAGGA GCACAGTATT
  GCATTAAGGT CAGCAAGGGT GTTTTAATAA TGCTCACTA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45551591	mCV23990833	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss135722401	ENSMUSSNP5540644	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs31599820					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121292256 () rs orientation: forward

Symbol	Name	Function Class
Rr584095	regulatory region 584095	1534 bp proximal
Rr584096	regulatory region 584096	1820 bp proximal
Slc44a3	solute carrier family 44, member 3	Intron