rs31598651 SNP Detail

Summary

• ID
  rs31598651
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37779032 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGCGCCT ATTAGTCAAC
  CAGCCAACAC CTAAAGAACC TGGTGTTCAC TCAGCTTAGG AGAAGGCTGG CAGGCACAGG
  CTCTGCCAGC CCAGTGTTTA TGGGTTAGCT AAGGGTTGAG GAGAGACCTG TGAAGAAGGG
  AAACAGATAC CATCTGTGAG CGCTGCCTAG TGCCAGCACT GTGATACCCT CTCTCATTCC
  W
  TCTGACACTC TGTCAGGTAG GTCTTGGTTA TGACCTCCAC TCCAGGCATT TTAGAGAGGT
  CATTTGCCGA AGCTCTCAGT GTGGGCATCA GGCTGTGGAG GTCACAAATG TTGGAGTCAC
  GGGGCCCTCT CCTACCCACA TCAGTTTGTC CTAGTTCGCT CTCTGGAAGA TAGAGACCTT
  GTCTGGGGTC ATGGTCCAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45550840	mCV24773872	ABI	CRAMUS_MOUSE	f	SNP	A	T	T	T
ss134812047	ENSMUSSNP4507609	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T		T
ss320712073	CHEV_3_37623805	CHEVERUD	SCREENING_POP	f	SNP					A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31598651					SNP	A	T	T	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37779032 () rs orientation: forward

Symbol	Name	Function Class
Gm5148	predicted gene 5148	523 bp upstream
Gm36620	predicted gene, 36620	within coordinates
Rr575548	regulatory region 575548	858 bp distal
Rr575549	regulatory region 575549	565 bp distal
Rr575550	regulatory region 575550	within coordinates
Rr575551	regulatory region 575551	1741 bp proximal
Tssr33056	transcription start site region 33056	545 bp upstream